> For the complete documentation index, see [llms.txt](https://docs.kbase.us/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.kbase.us/data/upload-download-guide.md).

# Data Upload and Download Guide

### A Quick Video Tutorial on Uploading and Downloading Data

{% embed url="<https://youtu.be/pEKYZbVkyCc>" %}

### Contents

1. [Data Types](/data/upload-download-guide/data-types.md)
2. [Importing Data](/data/upload-download-guide/uploads.md)
3. [Assemblies](/data/upload-download-guide/assembly.md)
4. [Genomes](/data/upload-download-guide/genome.md)
5. [FASTQ/SRA Reads](/data/upload-download-guide/reads.md)
6. [FBA Models](/data/upload-download-guide/fba-model.md)
7. [Media](/data/upload-download-guide/media.md)
8. [Expression Matrix](/data/upload-download-guide/expression-matrix.md)
9. [Phenotype Set](/data/upload-download-guide/phenotype-set.md)
10. [Amplicon Matrix](/data/upload-download-guide/amplicon-matrix.md)
11. [Chemical Abundance Matrix](/data/upload-download-guide/chemical-abundance-matrix.md)
12. [SampleSet](/data/upload-download-guide/sampleset.md)
13. [Compressed Files](/data/upload-download-guide/compressed-files.md)
14. [Downloading Data](/data/upload-download-guide/downloads.md)


---

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