Viral
These apps allow users to identify and analyze viral sequences in assemblies within KBase.
Apps
vContact2: perform guilt-by-contig-association automatic classification of viral contigs
VirSorter2: Identifies viral sequences from viral and microbial metagenomes
VirSorter (legacy)
VirMatcher: Predicts host-virus matches
Input
The viral workflow begins with Assemblies, either metagenome or single genomes. VirSorter produces the assemblies that should be used by vContact as input.
Narratives
Viral Annotation Pipeline in KBase: a streamlined use case of a pre-assembled small metagenome and a Cyanophage genome run through VirSorter to identify viral sequences and vContact to classify them.
Viral Analysis End-to-End: a more comprehensive tutorial with a use case from the Global Ocean Virome demonstrating how to go through the entire process starting with raw metagenomic reads.
These tutorial Narratives were made available by Ben Bolduc (Ohio State University).
Tutorial Webinar
SFA Collaboration Page
These apps were developed as part of the Microbes Persist SFA. To learn more about this collaboration, see: https://www.kbase.us/research/pett-ridge-sfa/.
Last updated