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On this page
  • Apps
  • Input
  • Narratives
  • Tutorial Webinar
  • SFA Collaboration Page

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  1. Community Developed Workflows and Tools

Viral

These apps allow users to identify and analyze viral sequences in assemblies within KBase.

PreviousTaxonomyNextRandom Walk with Restart Toolkit

Last updated 8 months ago

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Apps

  • : perform guilt-by-contig-association automatic classification of viral contigs

  • : Identifies viral sequences from viral and microbial metagenomes

    • VirSorter (legacy)

  • : Predicts host-virus matches

Input

The viral workflow begins with , either metagenome or single genomes. VirSorter produces the assemblies that should be used by vContact as input.

Narratives

  • – a streamlined use case of a pre-assembled small metagenome and a Cyanophage genome run through VirSorter to identify viral sequences and vContact to classify them.

  • – a more comprehensive tutorial with a use case from the Global Ocean Virome demonstrating how to go through the entire process starting with raw metagenomic reads.

    • Tutorial Narratives were made available by Ben Bolduc of Ohio State University.

Tutorial Webinar

SFA Collaboration Page

These apps were developed as part of the Microbes Persist SFA. To learn more about this collaboration, see: .

https://www.kbase.us/research/pett-ridge-sfa/
vContact2
VirSorter2
VirMatcher
Assemblies
Viral Annotation Pipeline in KBase
Viral Analysis End-to-End
Tutorial webinar presented by by Ben Bolduc (Ohio State University).