> For the complete documentation index, see [llms.txt](https://docs.kbase.us/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.kbase.us/workflows.md).
# Running Common Workflows
Here is an example outline of the major workflows and datatypes in KBase. Common workflows include genome assembly and annotation, comparing genomes through taxonomy, sequence analysis, metabolic modeling, transcriptomics and expression analysis, viral analysis, and community analysis through metagenomics.
Examples of common analysis workflows in KBase
Find example workflows here:
1. [Assembling & Annotating Microbial Genomes](/workflows/assembly-annotation.md)
2. [Comparative Genomics & Phylogenetic Analysis](/workflows/comparative-genomics.md)
3. [Constructing Metabolic Models](/workflows/metabolic-models.md)
4. [Metagenomic & Community Analysis](/workflows/metagenomic-analysis.md)
5. [RNAseq & Expression Analysis](/workflows/rnaseq.md)
6. [Samples & Metadata](/data/samples.md)
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