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  • Running Common Workflows
    • Assembling & Annotating Microbial Genomes
      • FAQ: Assembly and Annotation
    • Comparative Genomics & Phylogenetic Analysis
      • FAQ: Comparative Genomics
    • Metagenomic & Community Analysis
      • FAQ: Metagenomics & Community Analysis
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      • FAQ: RNA-seq Analysis
    • Constructing Metabolic Models
      • Constructing and Analyzing Metabolic Flux Models of Microbial Communities
      • FAQ: Metabolic Modeling
  • Community Developed Workflows and Tools
    • Functional Annotation
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Running Common Workflows

User guides on how to run different workflows in KBase.

PreviousApps in BetaNextAssembling & Annotating Microbial Genomes

Last updated 9 months ago

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Here is an example outline of the major workflows and datatypes in KBase. Common workflows include genome assembly and annotation, comparing genomes through taxonomy, sequence analysis, metabolic modeling, transcriptomics and expression analysis, viral analysis, and community analysis through metagenomics.

Find example workflows here:

Assembling & Annotating Microbial Genomes
Comparative Genomics & Phylogenetic Analysis
Constructing Metabolic Models
Metagenomic & Community Analysis
RNAseq & Expression Analysis
Samples & Metadata
Examples of common analysis workflows in KBase