Metagenomic & Community Analysis
Running Metagenomic and community analysis in KBase
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Running Metagenomic and community analysis in KBase
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KBase has a multitude of tools designed to analyze and data. They provide a way to understand the functional interactions between species in microbial communities. Annotated genomes extracted from metagenomic samples can be used for metabolic modeling, comparative phylogenomics, functional profiling, and more.
– this is a good example for understanding a metagenomic pipeline.
– demonstrates the application of bioinformatic tools for metagenome assembly and genome binning. This Narrative highlights the effective use of employing multiple genome binners and a bin optimization approach.
– demonstrates an in-depth example of metagenome-assembled genome extraction and analysis to obtain high-quality genomes.
Chivian et al. (2023) Metagenome-assembled genome extraction and analysis from microbiomes using KBase. Nature Protocols 18, 208-238.
Compare and contrast the enriched environment sample analysis to environmental sample.
– shows the streamlined process of annotating plant genome sequences, automatically constructing metabolic models based on genome annotations, and using models to test annotations.