Comparative Genomics and Phylogenetics
Some of the tools available for comparative genomics and phylogenetics
KBase provides multiple comparative genomics and phylogenetic analysis Apps to enable researchers to understand evolutionary relationships between organisms and explore structural and functional variance across genomes.

Phylogenetic Analysis

Sequence Homology

    Search and compare translated protein sequences via BLASTx, tBLASTn, and tBLASTx
    Search and compare nucleotide sequences via BLASTn
    Search and compare protein sequences via BLASTp and psiBLAST
    Build and analyze multiple sequence alignments (MSA) for nucleotide or protein sequences via MUSCLE

Pangenome Exploration

Last modified 9mo ago