Use abundance matrices with element, compound, or exometabolite data for analysis.
As both chemical abundance and amplicon matrices are similar, similar apps for cleaning, normalizing, and performing statistical comparisons can be done on both types. See the previous page on Data Matrices for information on using these apps.
You can view a few public Narratives that demonstrate popular use cases for chemical abundance tables in KBase.
- Cheminformatics expansion of known metabolites (based on known compounds in a metabolic model) and mapping onto unknown peaks from metabolomics data (PNNL Summer School workflows - WHONDRS)