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  • Apps
  • Inputs
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  • Tutorial Webinar
  • SFA Collaboration Page

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  1. Community Developed Workflows and Tools

Functional Annotation

These apps allow users to import and utilize external genome annotations that can be combined with annotations created by KBase apps such as DRAM, Prokka, or RASTtk.

PreviousCommunity Developed Workflows and ToolsNextFunctional and Taxonomic Profiling of MAGs

Last updated 7 months ago

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Apps

  • Enables upload of third-party annotations like EC and KEGG into KBase.

  • : Enables upload of third-party annotations to add to an existing genome into KBase in bulk.

  • : Compare and contrast metabolic annotations from multiple sources.

  • : Generate a consensus annotation by combining multiple annotation sources.

Inputs

These apps take with annotations as input. See for more on annotating genomes.

Narratives

  • – provides an example using a Streptomyces coelicolor strain A3(2) and annotations created in KBase and 3rd party tools.

    • Created and made available by Patrik D'haeseleer of Lawrence Livermore National Laboratory.

  • and – provide guidance through related workflows.

Tutorial Webinar

SFA Collaboration Page

These apps were developed as part of the Biofuels and Bioenergy SFA. To learn more about this collaboration, see: .

https://www.kbase.us/research/stuart-sfa/
Import Annotations From Staging:
Bulk Import Annotations From Staging
Compare Metabolic Annotations
Merge Metabolic Annotations
Genomes
Assembling & Annotation Microbial Genomes
Importing annotation sources for metabolic modeling
Microbial Genomics in KBase: Drafting Isolate Genomes
Microbial Metabolic Model Reconstruction and Analysis
Tutorial webinar presented by Patrik D'haeseleer of Lawrence Livermore National Laboratory