Functional Annotation
These apps allow users to import and utilize external genome annotations that can be combined with annotations created by KBase apps such as DRAM, Prokka, or RASTtk.
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These apps allow users to import and utilize external genome annotations that can be combined with annotations created by KBase apps such as DRAM, Prokka, or RASTtk.
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Import Annotations From Staging: Enables upload of third-party annotations like EC and KEGG into KBase.
Bulk Import Annotations From Staging: Enables upload of third-party annotations to add to an existing genome into KBase in bulk.
Compare Metabolic Annotations: Compare and contrast metabolic annotations from multiple sources.
Merge Metabolic Annotations: Generate a consensus annotation by combining multiple annotation sources.
These apps take Genomes with annotations as input. See Assembling & Annotation Microbial Genomes for more on annotating genomes.
Importing annotation sources for metabolic modeling – provides an example using a Streptomyces coelicolor strain A3(2) and annotations created in KBase and 3rd party tools.
Created and made available by Patrik D'haeseleer of Lawrence Livermore National Laboratory.
Microbial Genomics in KBase: Drafting Isolate Genomes and Microbial Metabolic Model Reconstruction and Analysis – provide guidance through related workflows.
These apps were developed as part of the Biofuels and Bioenergy SFA. To learn more about this collaboration, see: https://www.kbase.us/research/stuart-sfa/.