Functional Annotation
These apps allow users to import and utilize external genome annotations that can be combined with annotations created by KBase apps such as DRAM, Prokka, or RASTtk.
Apps
Import Annotations From Staging: Provides a way to upload third-party annotations like EC and KEGG into KBase.
Bulk Import Annotations From Staging: Provides a way to upload third-party annotations to add to an existing genome into KBase in bulk.
Compare Metabolic Annotations: Compare and contrast the metabolic annotations from multiple sources.
Merge Metabolic Annotations: Generate a consensus annotation by combining multiple annotation sources.
Inputs
These apps take Genomes with annotations as input.
See Assembling & Annotation Microbial Genomes for more on annotating genomes.
Narratives
A demo Narrative, Importing annotation sources for metabolic modeling, provides and example of the workflow using a Streptomyces coelicolor strain A3(2) and annotations created in KBase and with 3rd party tools.
This Narrative was created and made available by Patrik D'haeseleer of Lawrence Livermore National Laboratory.
The public tutorial Narratives Microbial Genomics in KBase: Drafting Isolate Genomes and Microbial Metabolc Model Reconstruction and Analysis Tutorial provide guidance on related workflows.
Tutorial Webinar
SFA Collaboration Page
These apps were developed as part of the Biofuels and Bioenergy SFA. To learn more about this collaboration, see: https://www.kbase.us/research/stuart-sfa/
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